Transcript: lnc-VSTM2A-4:1

Basic information

LNCipedia transcript ID: lnc-VSTM2A-4:1 
LNCipedia gene ID: lnc-VSTM2A-4
Location (hg38): chr7:54298220-54317340
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 647 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3416_chr7:54365912-54385033_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4028 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2A-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM2A-4:1
4.0 lnc-VSTM2A-4:1
4.1 lnc-VSTM2A-4:1
5.0 lnc-VSTM2A-4:1
5.1 lnc-CCT6A-63:1
5.2 lnc-VSTM2A-4:1