Transcript: lnc-VSTM2B-14:1

Basic information

LNCipedia transcript ID: lnc-VSTM2B-14:1 
LNCipedia gene ID: lnc-VSTM2B-14
Ensembl Gene ID: ENSG00000266976
Ensembl Transcript ID: ENST00000587961
RefSeq ID: NR_135636
Location (hg38): chr19:28606688-28615229
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4453 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT064050; ENST00000587961.1; NR_135636.1
Alternative gene names: ENSG00000266976.1; AC079466.1; LOC102724908


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 225.2883 coding 
CPAT coding probability 74.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VSTM2B-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM2B-14:1
4.0 lnc-VSTM2B-14:1
4.1 lnc-VSTM2B-14:1
5.0 lnc-VSTM2B-14:1
5.1 lnc-GPI-74:1
5.2 lnc-VSTM2B-14:1