Transcript: lnc-VSTM2B-17:1

Basic information

LNCipedia transcript ID: lnc-VSTM2B-17:1 
LNCipedia gene ID: lnc-VSTM2B-17
Ensembl Gene ID: ENSG00000267509
Ensembl Transcript ID: ENST00000590229
Location (hg38): chr19:28065267-28125430
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT064029; ENST00000590229.1
Alternative gene names: ENSG00000267509.1; CTD-2043I16.1; ENSG00000267509.5; AC010511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.1858 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-17:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM2B-17:1
4.0 lnc-VSTM2B-17:1
4.1 lnc-VSTM2B-17:1
5.0 lnc-VSTM2B-17:1
5.1 lnc-GPI-77:1
5.2 lnc-VSTM2B-17:1