Transcript: lnc-VSTM2B-5:11

Basic information

LNCipedia transcript ID: lnc-VSTM2B-5:11 
LNCipedia gene ID: lnc-VSTM2B-5
Location (hg38): chr19:29213235-29219700
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5007 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267498.1|HBMT00000704957.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.149 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-5:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-VSTM2B-5:11
5.0 lnc-VSTM2B-5:11
5.1 lnc-GPI-71:5
5.2 lnc-VSTM2B-5:11