Transcript: lnc-VSTM2B-5:19

Basic information

LNCipedia transcript ID: lnc-VSTM2B-5:19 
LNCipedia gene ID: lnc-VSTM2B-5
Location (hg38): chr19:29218927-29219696
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 296 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026980; NONHSAT064096
Alternative gene names: XLOC_013029; linc-VSTM2B-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -514.9899 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-5:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSTM2B-4:1
3.1 lnc-VSTM2B-4:1
4.0 lnc-VSTM2B-4:1
4.1 lnc-VSTM2B-5:19
5.0 lnc-VSTM2B-5:19
5.1 lnc-GPI-71:19
5.2 lnc-VSTM2B-5:19