Transcript: lnc-VSTM2B-5:4

Basic information

LNCipedia transcript ID: lnc-VSTM2B-5:4 
LNCipedia gene ID: lnc-VSTM2B-5
Ensembl Gene ID: ENSG00000267498
Ensembl Transcript ID: ENST00000587859
Location (hg38): chr19:29213235-29215815
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 709 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT064091; ENST00000587859.1
Alternative gene names: ENSG00000267498.1; CTB-32O4.2; AC007786.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.1987 non-coding 
CPAT coding probability 5.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-5:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM2B-5:4
4.0 lnc-VSTM2B-5:4
4.1 lnc-VSTM2B-5:4
5.0 lnc-VSTM2B-5:4
5.1 lnc-GPI-71:1
5.2 lnc-VSTM2B-5:4