Transcript: lnc-VSTM2B-7:1

Basic information

LNCipedia transcript ID: lnc-VSTM2B-7:1 
LNCipedia gene ID: lnc-VSTM2B-7
Location (hg38): chr19:28883520-28898008
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026974; NONHSAT064064
Alternative gene names: XLOC_013026; linc-VSTM2B-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.4413 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSTM2B-7:1
3.1 lnc-VSTM2B-7:1
4.0 lnc-VSTM2B-7:1
4.1 lnc-VSTM2B-7:1
5.0 lnc-VSTM2B-7:1
5.1 lnc-GPI-72:2
5.2 lnc-VSTM2B-7:1