Transcript: lnc-VSTM2B-9:1

Basic information

LNCipedia transcript ID: lnc-VSTM2B-9:1 
LNCipedia gene ID: lnc-VSTM2B-9
Location (hg38): chr19:27793494-27806776
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1329 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000444167
Alternative gene names: ENSG00000233391; AC006504.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 51.1961 non-coding 
CPAT coding probability 3.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VSTM2B-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSTM2B-9:1
3.1 lnc-VSTM2B-9:1
4.0 lnc-VSTM2B-9:1
4.1 lnc-VSTM2B-9:1
5.0 lnc-VSTM2B-9:1
5.1 lnc-ZNF429-64:19
5.2 lnc-VSTM2B-9:1