Transcript: lnc-VSTM2B-9:12

Basic information

LNCipedia transcript ID: lnc-VSTM2B-9:12 
LNCipedia gene ID: lnc-VSTM2B-9
Ensembl Gene ID: ENSG00000267575
Ensembl Transcript ID: ENST00000585917
Location (hg38): chr19:27793523-27805772
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000585917.1; ENST00000585917.5
Alternative gene names: ENSG00000267575.2; CTC-459F4.3; ENSG00000267575.6; AC006504.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 31.297 non-coding 
CPAT coding probability 12.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VSTM2B-9:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM2B-9:12
4.0 lnc-VSTM2B-9:12
4.1 lnc-VSTM2B-9:12
5.0 lnc-VSTM2B-9:12
5.1 lnc-ZNF429-64:23
5.2 lnc-VSTM2B-9:12