Transcript: lnc-VSTM2B-9:22

Basic information

LNCipedia transcript ID: lnc-VSTM2B-9:22 
LNCipedia gene ID: lnc-VSTM2B-9
Location (hg38): chr19:27917587-27919864
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1546 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT064024; FPKM1_group_14548_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 127.753 coding 
CPAT coding probability 50.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VSTM2B-9:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM2B-9:22
4.0 lnc-VSTM2B-9:22
4.1 lnc-VSTM2B-9:22
5.0 lnc-VSTM2B-9:22
5.1 lnc-ZNF429-64:38
5.2 lnc-VSTM2B-9:22