Transcript: lnc-VSTM2B-9:29

Basic information

LNCipedia transcript ID: lnc-VSTM2B-9:29 
LNCipedia gene ID: lnc-VSTM2B-9
Location (hg38): chr19:27793454-27811273
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6289 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA673:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 61.4352 coding 
CPAT coding probability 43.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VSTM2B-9:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-VSTM2B-9:29
4.1 lnc-VSTM2B-9:29
5.0 lnc-VSTM2B-9:29
5.1 lnc-ZNF429-64:8
5.2 lnc-VSTM2B-9:29