Transcript: lnc-VSTM2B-9:30

Basic information

LNCipedia transcript ID: lnc-VSTM2B-9:30 
LNCipedia gene ID: lnc-VSTM2B-9
Ensembl Gene ID: ENSG00000281468
Ensembl Transcript ID: ENST00000621046
Location (hg38): chr19:27802838-27803472
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 635 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621046.2
Alternative gene names: ENSG00000281468.1; CTC-459F4.9; AC006504.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.7819 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-9:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-VSTM2B-9:30
4.1 lnc-VSTM2B-9:30
5.0 lnc-VSTM2B-9:30
5.1 lnc-ZNF429-64:35
5.2 lnc-VSTM2B-9:30