Transcript: lnc-VSTM2B-9:33

Basic information

LNCipedia transcript ID: lnc-VSTM2B-9:33 
LNCipedia gene ID: lnc-VSTM2B-9
Location (hg38): chr19:27780496-27787995
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5737 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000038967.1|MICT00000172131.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.8838 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-9:33 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-VSTM2B-9:33
5.0 lnc-VSTM2B-9:33
5.1 lnc-ZNF429-64:4
5.2 lnc-VSTM2B-9:33