Transcript: lnc-VSX1-1:15

Basic information

LNCipedia transcript ID: lnc-VSX1-1:15 
LNCipedia gene ID: lnc-VSX1-1
Location (hg38): chr20:25143116-25148772
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 635 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230725.1|HBMT00000897307.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -200.0792 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSX1-1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-VSX1-1:15
5.0 lnc-VSX1-1:15
5.1 lnc-CST4-45:11
5.2 lnc-VSX1-1:15