Transcript: lnc-VTCN1-3:3

Basic information

LNCipedia transcript ID: lnc-VTCN1-3:3 
LNCipedia gene ID: lnc-VTCN1-3
Location (hg38): chr1:117364865-117366794
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1930 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA118:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -133.5357 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VTCN1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-VTCN1-3:3
4.1 lnc-VTCN1-3:3
5.0 lnc-VTCN1-3:3
5.1 lnc-CD58-20:5
5.2 lnc-VTCN1-3:3