Transcript: lnc-VTI1A-1:3

Basic information

LNCipedia transcript ID: lnc-VTI1A-1:3 
LNCipedia gene ID: lnc-VTI1A-1
RefSeq ID: NR_120684
Location (hg38): chr10:112823496-112827732
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4237 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120684; NR_120684.1
Alternative gene names: LOC103344931


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.8216 non-coding 
CPAT coding probability 15.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VTI1A-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VTI1A-1:3
4.0 lnc-VTI1A-1:3
4.1 lnc-VTI1A-1:3
5.0 lnc-VTI1A-1:3
5.1 lnc-VTI1A-1:3
5.2 lnc-VTI1A-1:3