Transcript: lnc-VTI1A-3:1

Basic information

LNCipedia transcript ID: lnc-VTI1A-3:1 
LNCipedia gene ID: lnc-VTI1A-3
Location (hg38): chr10:113083794-113086776
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1952 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420773.1; RP11-258A12.3-001; OTTHUMT00000050410.1; NONHSAT016422
Alternative gene names: ENSG00000237996.1; RP11-258A12.3; OTTHUMG00000019069.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.7852 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VTI1A-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VTI1A-3:1
4.0 lnc-VTI1A-3:1
4.1 lnc-VTI1A-3:1
5.0 lnc-VTI1A-3:1
5.1 lnc-VTI1A-12:1
5.2 lnc-VTI1A-3:1