Transcript: lnc-WARS2-2:2

Basic information

LNCipedia transcript ID: lnc-WARS2-2:2 
LNCipedia gene ID: lnc-WARS2-2
Ensembl Gene ID: ENSG00000227712
Ensembl Transcript ID: ENST00000457719
Location (hg38): chr1:119260265-119327303
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 898 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000620; ENST00000457719; ENST00000457719.1; RP11-418J17.3-001; OTTHUMT00000034533.1; NONHSAT005546
Alternative gene names: XLOC_000983; linc-WARS2-1; ENSG00000227712; RP11-418J17.3; ENSG00000227712.1; OTTHUMG00000012411.1; AL359915.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.5647 non-coding 
CPAT coding probability 3.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WARS2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WARS2-2:2
3.1 lnc-WARS2-2:2
4.0 lnc-WARS2-2:2
4.1 lnc-WARS2-2:2
5.0 lnc-WARS2-2:2
5.1 lnc-WARS2-2:2
5.2 lnc-WARS2-2:2