Transcript: lnc-WASHC3-4:2

Basic information

LNCipedia transcript ID: lnc-WASHC3-4:2 
LNCipedia gene ID: lnc-WASHC3-4
Ensembl Gene ID: ENSG00000257202
Ensembl Transcript ID: ENST00000551918
Location (hg38): chr12:101923410-101924719
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 564 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551918.1; RP11-512N21.3-001; OTTHUMT00000409201.1; NONHSAT030309
Alternative gene names: ENSG00000257202.1; RP11-512N21.3; OTTHUMG00000170448.1; AC084398.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.0581 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WASHC3-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC53-2:2
4.0 lnc-CCDC53-2:2
4.1 lnc-CCDC53-2:2
5.0 lnc-CCDC53-2:2
5.1 lnc-NUP37-4:2
5.2 lnc-WASHC3-4:2