Transcript: lnc-WDR17-1:1

Basic information

LNCipedia transcript ID: lnc-WDR17-1:1 
LNCipedia gene ID: lnc-WDR17-1
Ensembl Gene ID: ENSG00000249106
Ensembl Transcript ID: ENST00000514864
RefSeq ID: NR_125901
Location (hg38): chr4:175790307-175812189
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1213 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000514864.1; RP11-806K15.1-001; OTTHUMT00000362350.1; NONHSAT099345; NR_125901; NR_125901.1
Alternative gene names: ENSG00000249106.1; RP11-806K15.1; OTTHUMG00000160795.1; AC097537.1; LOC101928590


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.5509 non-coding 
CPAT coding probability 9.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR17-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR17-1:1
4.0 lnc-WDR17-1:1
4.1 lnc-WDR17-1:1
5.0 lnc-WDR17-1:1
5.1 lnc-GALNTL6-38:1
5.2 lnc-WDR17-1:1