Transcript: lnc-WDR26-2:1

Basic information

LNCipedia transcript ID: lnc-WDR26-2:1 
LNCipedia gene ID: lnc-WDR26-2
Ensembl Gene ID: ENSG00000229400
Ensembl Transcript ID: ENST00000431691
Location (hg38): chr1:224717504-224730662
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 837 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431691.1; RP11-3L21.2-001; OTTHUMT00000092018.1; NONHSAT009823
Alternative gene names: ENSG00000229400.1; RP11-3L21.2; OTTHUMG00000037717.1; AL596330.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 73.701 coding 
CPAT coding probability 12.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-WDR26-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR26-2:1
4.0 lnc-WDR26-2:1
4.1 lnc-WDR26-2:1
5.0 lnc-WDR26-2:1
5.1 lnc-LEFTY2-21:1
5.2 lnc-WDR26-2:1