Transcript: lnc-WDR37-3:1

Basic information

LNCipedia transcript ID: lnc-WDR37-3:1 
LNCipedia gene ID: lnc-WDR37-3
Ensembl Gene ID: ENSG00000226694
Ensembl Transcript ID: ENST00000435539
Location (hg38): chr10:2071845-2081097
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017756; ENST00000435539; ENST00000435539.1; RP11-69C17.2-002; OTTHUMT00000046434.1; NONHSAT010948
Alternative gene names: XLOC_008339; linc-PFKP-6; ENSG00000226694; RP11-69C17.2; ENSG00000226694.1; OTTHUMG00000017544.1; ENSG00000226694.2; AL441943.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.6217 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR37-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR37-2:1
3.1 lnc-WDR37-3:1
4.0 lnc-WDR37-3:1
4.1 lnc-WDR37-3:1
5.0 lnc-WDR37-3:1
5.1 lnc-NPY4R2-543:1
5.2 lnc-WDR37-3:1