Transcript: lnc-WDR4-1:2

Basic information

LNCipedia transcript ID: lnc-WDR4-1:2 
LNCipedia gene ID: lnc-WDR4-1
Ensembl Gene ID: ENSG00000225218
Ensembl Transcript ID: ENST00000431150
Location (hg38): chr21:42831040-42836477
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028942; ENST00000431150; ENST00000431150.1; AP001628.6-001; OTTHUMT00000195450.1; NONHSAT082350
Alternative gene names: XLOC_014097; linc-RSPH1-1; ENSG00000225218; AP001628.6; ENSG00000225218.1; OTTHUMG00000086824.1; AP001628.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.3013 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR4-1:2
3.1 lnc-WDR4-1:2
4.0 lnc-WDR4-1:2
4.1 lnc-WDR4-1:2
5.0 lnc-WDR4-1:2
5.1 lnc-POFUT2-51:4
5.2 lnc-WDR4-1:2