Transcript: lnc-WDR4-3:1

Basic information

LNCipedia transcript ID: lnc-WDR4-3:1 
LNCipedia gene ID: lnc-WDR4-3
Location (hg38): chr21:42781074-42782233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 788 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00028941; ENST00000420273; ENST00000420273.1; AP001628.7-001; OTTHUMT00000195486.1; NONHSAT082346
Alternative gene names: XLOC_014096; linc-RSPH1-3; ENSG00000233754; AP001628.7; ENSG00000233754.1; OTTHUMG00000086827.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.6991 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR4-2:1
3.1 lnc-WDR4-3:1
4.0 lnc-WDR4-3:1
4.1 lnc-WDR4-3:1
5.0 lnc-WDR4-3:1
5.1 lnc-POFUT2-52:1
5.2 lnc-WDR4-3:1