Transcript: lnc-WDR70-7:1

Basic information

LNCipedia transcript ID: lnc-WDR70-7:1 
HGNC Gene Symbol: lnc-WDR70-7    
HGNC Full Gene Name: GDNF antisense RNA 1
Ensembl Gene ID: ENSG00000248587
Ensembl Transcript ID: ENST00000637595
Location (hg38): chr5:37811589-37874894
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1886 bp
Exons: 12
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637595.1
Alternative gene names: ENSG00000248587.7; GDNF-AS1; GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.5258 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:1 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GDNF-AS1:8
5.0 GDNF-AS1:8
5.1 lnc-CARD6-57:1
5.2 lnc-WDR70-7:1