Transcript: lnc-WDR70-7:11

Basic information

LNCipedia transcript ID: lnc-WDR70-7:11 
LNCipedia gene ID: lnc-WDR70-7
Location (hg38): chr5:37839921-37874824
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 516 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248587.2|FTMT21900048037.1
Alternative gene names: GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -80.8057 non-coding 
CPAT coding probability 17.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:11 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GDNF-AS1:17
5.0 GDNF-AS1:17
5.1 lnc-CARD6-57:11
5.2 lnc-WDR70-7:11