Transcript: lnc-WDR70-7:12

Basic information

LNCipedia transcript ID: lnc-WDR70-7:12 
LNCipedia gene ID: lnc-WDR70-7
Location (hg38): chr5:37839921-37874894
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1121 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248587.2|ENST00000503382.2
Alternative gene names: GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -142.8553 non-coding 
CPAT coding probability 87.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-WDR70-7:12 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GDNF-AS1:18
5.0 GDNF-AS1:18
5.1 lnc-CARD6-57:12
5.2 lnc-WDR70-7:12