Transcript: lnc-WDR70-7:19

Basic information

LNCipedia transcript ID: lnc-WDR70-7:19 
HGNC Gene Symbol: lnc-WDR70-7    
HGNC Full Gene Name: GDNF antisense RNA 1
Ensembl Gene ID: ENSG00000248587
Ensembl Transcript ID: ENST00000510986
Location (hg38): chr5:37873425-37875799
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1941 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510986.2; GDNF-AS1-001; OTTHUMT00000367344.2
Alternative gene names: ENSG00000248587.2; GDNF-AS1; OTTHUMG00000162110.2; ENSG00000248587.6; GDNFOS; ENSG00000248587.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.2403 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:19 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR70-1:6
4.0 GDNF-AS1:7
4.1 GDNF-AS1:7
5.0 GDNF-AS1:7
5.1 lnc-CARD6-57:19
5.2 lnc-WDR70-7:19