Transcript: lnc-WDR70-7:22

Basic information

LNCipedia transcript ID: lnc-WDR70-7:22 
LNCipedia gene ID: lnc-WDR70-7
Location (hg38): chr5:37948165-37951055
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 769 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT101077; FPKM1_group_25241_transcript_1
Alternative gene names: GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.3131 non-coding 
CPAT coding probability 5.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:22 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR70-2:2
4.0 lnc-WDR70-2:2
4.1 GDNF-AS1:22
5.0 GDNF-AS1:22
5.1 lnc-CARD6-57:22
5.2 lnc-WDR70-7:22