Transcript: lnc-WDR70-7:23

Basic information

LNCipedia transcript ID: lnc-WDR70-7:23 
HGNC Gene Symbol: lnc-WDR70-7    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2110
Ensembl Gene ID: ENSG00000251518
Ensembl Transcript ID: ENST00000503870
RefSeq ID: NR_134262
Location (hg38): chr5:37948491-37951055
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009382; ENST00000503870; ENST00000503870.1; CTD-2130F23.2-001; OTTHUMT00000367322.1; NONHSAT101078; NR_134262.1
Alternative gene names: XLOC_004342; linc-EGFLAM-3; ENSG00000251518; CTD-2130F23.2; ENSG00000251518.1; OTTHUMG00000162103.1; GDNFOS; LINC02110; LOC105374729


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.3131 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:23 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR70-2:1
3.1 lnc-WDR70-2:1
4.0 lnc-WDR70-2:1
4.1 GDNF-AS1:23
5.0 GDNF-AS1:23
5.1 lnc-CARD6-57:23
5.2 lnc-WDR70-7:23