Transcript: lnc-WDR70-7:24

Basic information

LNCipedia transcript ID: lnc-WDR70-7:24 
LNCipedia gene ID: lnc-WDR70-7
Location (hg38): chr5:37953384-38013518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 319 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009923; NONHSAT101079
Alternative gene names: XLOC_004343; linc-EGFLAM-2; GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.3592 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:24 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR70-3:1
3.1 lnc-WDR70-3:1
4.0 lnc-WDR70-3:1
4.1 GDNF-AS1:24
5.0 GDNF-AS1:24
5.1 lnc-CARD6-57:24
5.2 lnc-WDR70-7:24