Transcript: lnc-WDR70-7:25

Basic information

LNCipedia transcript ID: lnc-WDR70-7:25 
LNCipedia gene ID: lnc-WDR70-7
Ensembl Gene ID: ENSG00000248533
Ensembl Transcript ID: ENST00000506429
Location (hg38): chr5:37953402-37966964
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 487 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009383; ENST00000506429; ENST00000506429.1; CTD-2130F23.1-001; OTTHUMT00000367333.1; NONHSAT101080
Alternative gene names: XLOC_004343; linc-EGFLAM-2; ENSG00000248533; CTD-2130F23.1; ENSG00000248533.1; OTTHUMG00000162105.1; GDNFOS; AC034226.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.3592 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:25 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR70-3:2
3.1 lnc-WDR70-3:2
4.0 lnc-WDR70-3:2
4.1 GDNF-AS1:25
5.0 GDNF-AS1:25
5.1 lnc-CARD6-57:25
5.2 lnc-WDR70-7:25