Transcript: lnc-WDR70-7:9

Basic information

LNCipedia transcript ID: lnc-WDR70-7:9 
LNCipedia gene ID: lnc-WDR70-7
Location (hg38): chr5:37839921-37865701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1123 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248587.2|FTMT21900023930.1
Alternative gene names: GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -115.1471 non-coding 
CPAT coding probability 7.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:9 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GDNF-AS1:15
5.0 GDNF-AS1:15
5.1 lnc-CARD6-57:9
5.2 lnc-WDR70-7:9