Transcript: lnc-WDR77-1:2

Basic information

LNCipedia transcript ID: lnc-WDR77-1:2 
LNCipedia gene ID: lnc-WDR77-1
Ensembl Gene ID: ENSG00000243960
Ensembl Transcript ID: ENST00000416099
Location (hg38): chr1:111438640-111441228
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 723 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416099.1; RP11-552M11.4-002; OTTHUMT00000032470.1; NONHSAT005183
Alternative gene names: ENSG00000243960.1; RP11-552M11.4; OTTHUMG00000011749.1; AL390195.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.0478 non-coding 
CPAT coding probability 9.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR77-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR77-1:2
4.0 lnc-WDR77-1:2
4.1 lnc-WDR77-1:2
5.0 lnc-WDR77-1:2
5.1 lnc-DENND2D-8:2
5.2 lnc-WDR77-1:2