Transcript: lnc-WFS1-3:1

Basic information

LNCipedia transcript ID: lnc-WFS1-3:1 
LNCipedia gene ID: lnc-WFS1-3
Location (hg38): chr4:6200733-6238317
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2547 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000508601; ENST00000508601.1; RP11-586D19.1-001; OTTHUMT00000359673.1; NONHSAT094982
Alternative gene names: ENSG00000249896; RP11-586D19.1; ENSG00000249896.1; OTTHUMG00000160216.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.8706 non-coding 
CPAT coding probability 40.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-WFS1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WFS1-3:1
3.1 lnc-WFS1-3:1
4.0 lnc-WFS1-3:1
4.1 lnc-WFS1-3:1
5.0 lnc-WFS1-3:1
5.1 lnc-GPR78-38:3
5.2 lnc-WFS1-3:1