Transcript: lnc-WIF1-6:13

Basic information

LNCipedia transcript ID: lnc-WIF1-6:13 
LNCipedia gene ID: lnc-WIF1-6
Ensembl Gene ID: ENSG00000250748
Ensembl Transcript ID: ENST00000544557
Location (hg38): chr12:65558431-65642372
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 854 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544557; ENST00000544557.1; RP11-230G5.2-007; OTTHUMT00000401448.1; NONHSAT029194
Alternative gene names: ENSG00000250748; RP11-230G5.2; ENSG00000250748.2; OTTHUMG00000168872.1; ENSG00000250748.6; AC025419.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.7758 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WIF1-6:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-366L20.2.1-1:1
3.1 lnc-RP11-366L20.2.1-2:1
4.0 lnc-RP11-366L20.2.1-6:3
4.1 lnc-RP11-366L20.2.1-6:3
5.0 lnc-RP11-366L20.2.1-6:3
5.1 lnc-LLPH-17:13
5.2 lnc-WIF1-6:13