Transcript: lnc-WISP1-3:1

Basic information

LNCipedia transcript ID: lnc-WISP1-3:1 
LNCipedia gene ID: lnc-WISP1-3
Ensembl Gene ID: ENSG00000253561
Ensembl Transcript ID: ENST00000517695
Location (hg38): chr8:133771409-133814537
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517695; ENST00000517695.1; CTD-2588J1.1-001; OTTHUMT00000379148.1; NONHSAT129244
Alternative gene names: ENSG00000253561; CTD-2588J1.1; ENSG00000253561.1; OTTHUMG00000164537.1; AC133634.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.5993 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WISP1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WISP1-3:1
3.1 lnc-WISP1-3:1
4.0 lnc-WISP1-3:1
4.1 lnc-WISP1-3:1
5.0 lnc-WISP1-3:1
5.1 lnc-MYC-57:1
5.2 lnc-WISP1-3:1