Transcript: lnc-WISP3-1:1

Basic information

LNCipedia transcript ID: lnc-WISP3-1:1 
LNCipedia gene ID: lnc-WISP3-1
Location (hg38): chr6:111900489-111901851
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 762 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011357; ENST00000449069; ENST00000449069.1; RP1-97J1.2-001; OTTHUMT00000041866.1; NONHSAT114492
Alternative gene names: XLOC_005430; linc-WISP3-1; ENSG00000227012; RP1-97J1.2; ENSG00000227012.1; OTTHUMG00000015381.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.9302 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WISP3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WISP3-1:1
3.1 lnc-WISP3-1:1
4.0 lnc-WISP3-1:1
4.1 lnc-WISP3-1:1
5.0 lnc-WISP3-1:1
5.1 lnc-WISP3-9:2
5.2 lnc-WISP3-1:1