Transcript: lnc-WRB-2:4

Basic information

LNCipedia transcript ID: lnc-WRB-2:4 
HGNC Gene Symbol: lnc-WRB-2    
HGNC Full Gene Name: BRWD1 antisense RNA 1
Ensembl Gene ID: ENSG00000238141
Ensembl Transcript ID: ENST00000423274
RefSeq ID: NR_046655
Location (hg38): chr21:39315707-39323218
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 691 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028848; ENST00000423274.2; BRWD1-AS1-001; OTTHUMT00000257965.2; NONHSAT082164; NR_046655; NR_046655.1
Alternative gene names: XLOC_013942; linc-WRB-2; ENSG00000238141.2; BRWD1-AS1; OTTHUMG00000133705.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.4083 non-coding 
CPAT coding probability 9.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WRB-2:4 yes no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WRB-2:4
3.1 lnc-WRB-2:4
4.0 lnc-WRB-2:4
4.1 lnc-WRB-2:4
5.0 lnc-WRB-2:4
5.1 lnc-SIM2-66:11
5.2 lnc-WRB-2:4