Transcript: lnc-WSB1-3:1

Basic information

LNCipedia transcript ID: lnc-WSB1-3:1 
LNCipedia gene ID: lnc-WSB1-3
Ensembl Gene ID: ENSG00000266313
Ensembl Transcript ID: ENST00000581118
Location (hg38): chr17:27333256-27348491
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581118.1; RP11-173M1.4-001; OTTHUMT00000445013.1; NONHSAT052306
Alternative gene names: ENSG00000266313.1; RP11-173M1.4; OTTHUMG00000179153.1; AC026254.4; AC026254.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.8263 non-coding 
CPAT coding probability 5.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WSB1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WSB1-3:1
4.0 lnc-WSB1-3:1
4.1 lnc-WSB1-3:1
5.0 lnc-WSB1-3:1
5.1 lnc-PIPOX-65:1
5.2 lnc-WSB1-3:1