Transcript: lnc-XCL2-2:1

Basic information

LNCipedia transcript ID: lnc-XCL2-2:1 
LNCipedia gene ID: lnc-XCL2-2
Ensembl Gene ID: ENSG00000228697
Ensembl Transcript ID: ENST00000441851
Location (hg38): chr1:168400829-168422656
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1801 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000671; ENST00000441851; ENST00000441851.1; RP5-968D22.1-001; OTTHUMT00000083820.1
Alternative gene names: XLOC_001083; linc-GPR161-2; ENSG00000228697; RP5-968D22.1; ENSG00000228697.1; OTTHUMG00000034644.2; ENSG00000228697.2; RP5-968D22.3; AL023755.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.0158 non-coding 
CPAT coding probability 22.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XCL2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XCL2-2:1
3.1 lnc-XCL2-2:1
4.0 lnc-XCL2-2:1
4.1 lnc-XCL2-2:1
5.0 lnc-XCL2-2:1
5.1 lnc-SH2D1B-75:4
5.2 lnc-XCL2-2:1