Transcript: lnc-XCL2-2:4

Basic information

LNCipedia transcript ID: lnc-XCL2-2:4 
LNCipedia gene ID: lnc-XCL2-2
Ensembl Gene ID: ENSG00000228697
Ensembl Transcript ID: ENST00000636459
Location (hg38): chr1:168401474-168495685
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1665 bp
Exons: 9
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636459.1
Alternative gene names: ENSG00000228697.2; RP5-968D22.3; AL023755.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.7083 non-coding 
CPAT coding probability 12.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XCL2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-XCL2-2:4
5.0 lnc-XCL2-2:4
5.1 lnc-SH2D1B-75:1
5.2 lnc-XCL2-2:4