Transcript: lnc-XCL2-2:5

Basic information

LNCipedia transcript ID: lnc-XCL2-2:5 
LNCipedia gene ID: lnc-XCL2-2
Ensembl Gene ID: ENSG00000228697
Ensembl Transcript ID: ENST00000422253
Location (hg38): chr1:168464214-168495644
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000673; ENST00000422253; ENST00000422253.1; RP5-968D22.3-001; OTTHUMT00000097974.1
Alternative gene names: XLOC_001084; linc-GPR161-1; ENSG00000237658; RP5-968D22.3; ENSG00000237658.1; OTTHUMG00000040769.1; ENSG00000228697.2; AL023755.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.7083 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XCL2-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XCL2-1:1
3.1 lnc-XCL2-1:1
4.0 lnc-XCL2-1:1
4.1 lnc-XCL2-2:5
5.0 lnc-XCL2-2:5
5.1 lnc-SH2D1B-75:2
5.2 lnc-XCL2-2:5