Transcript: lnc-XCL2-2:6

Basic information

LNCipedia transcript ID: lnc-XCL2-2:6 
LNCipedia gene ID: lnc-XCL2-2
RefSeq ID: NR_125956
Location (hg38): chr1:168464114-168495644
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 619 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125956; NR_125956.1
Alternative gene names: LOC101928565


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.7083 non-coding 
CPAT coding probability 2.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XCL2-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XCL2-1:2
4.0 lnc-XCL2-1:2
4.1 lnc-XCL2-2:6
5.0 lnc-XCL2-2:6
5.1 lnc-SH2D1B-75:3
5.2 lnc-XCL2-2:6