Transcript: lnc-XKR6-3:1

Basic information

LNCipedia transcript ID: lnc-XKR6-3:1 
LNCipedia gene ID: lnc-XKR6-3
Ensembl Gene ID: ENSG00000255020
Ensembl Transcript ID: ENST00000525867
Location (hg38): chr8:11345748-11347502
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1099 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525867.1; AF131216.5-001; OTTHUMT00000383896.1; NONHSAT125050
Alternative gene names: ENSG00000255020.1; AF131216.5; OTTHUMG00000165414.1; AF131216.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.5959 non-coding 
CPAT coding probability 9.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XKR6-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AF131216.5.1-1:1
4.0 lnc-AF131216.5.1-1:1
4.1 lnc-AF131216.5.1-1:1
5.0 lnc-AF131216.5.1-1:1
5.1 lnc-PINX1-21:1
5.2 lnc-XKR6-3:1