Transcript: lnc-XKR7-1:1

Basic information

LNCipedia transcript ID: lnc-XKR7-1:1 
LNCipedia gene ID: lnc-XKR7-1
Location (hg38): chr20:31999047-32003387
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4341 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000562532.1; RP1-310O13.12-001; OTTHUMT00000430677.1; NONHSAT079329
Alternative gene names: ENSG00000260903.1; RP1-310O13.12; OTTHUMG00000175630.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.9908 non-coding 
CPAT coding probability 47.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-XKR7-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XKR7-1:1
4.0 lnc-XKR7-1:1
4.1 lnc-XKR7-1:1
5.0 lnc-XKR7-1:1
5.1 lnc-BPIFB2-20:1
5.2 lnc-XKR7-1:1