Transcript: lnc-XPC-10:4

Basic information

LNCipedia transcript ID: lnc-XPC-10:4 
LNCipedia gene ID: lnc-XPC-10
Location (hg38): chr3:14520692-14525983
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4116 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000422481.1; GRIP2-002; OTTHUMT00000340583.1
Alternative gene names: ENSG00000144596.7; GRIP2; OTTHUMG00000155544.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 85.7342 coding 
CPAT coding probability 24.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-XPC-10:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XPC-5:6
4.0 lnc-XPC-5:6
4.1 lnc-XPC-5:6
5.0 lnc-XPC-5:6
5.1 lnc-SH3BP5-24:4
5.2 lnc-XPC-10:4