Transcript: lnc-XPC-5:7

Basic information

LNCipedia transcript ID: lnc-XPC-5:7 
LNCipedia gene ID: lnc-XPC-5
Location (hg38): chr3:14491170-14512858
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4271 bp
Exons: 11
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000430219.1; GRIP2-004; OTTHUMT00000340585.1
Alternative gene names: ENSG00000144596.7; GRIP2; OTTHUMG00000155544.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2996.7737 coding 
CPAT coding probability 99.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-XPC-5:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XPC-5:7
4.0 lnc-XPC-5:7
4.1 lnc-XPC-5:7
5.0 lnc-XPC-5:7
5.1 lnc-SH3BP5-26:1
5.2 lnc-XPC-5:7