Transcript: lnc-XPO7-3:3

Basic information

LNCipedia transcript ID: lnc-XPO7-3:3 
LNCipedia gene ID: lnc-XPO7-3
Ensembl Gene ID: ENSG00000254334
Ensembl Transcript ID: ENST00000519996
RefSeq ID: NR_104677
Location (hg38): chr8:21298239-21309449
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1633 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00014484; ENST00000519996; ENST00000519996.1; RP11-24P4.1-001; OTTHUMT00000376243.2; NONHSAT125429; NR_104677; NR_104677.1
Alternative gene names: XLOC_006735; linc-XPO7-3; ENSG00000254334; RP11-24P4.1; ENSG00000254334.1; OTTHUMG00000163893.2; AC021355.1; LOC101929172


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.2143 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XPO7-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XPO7-3:3
3.1 lnc-XPO7-3:3
4.0 lnc-XPO7-3:3
4.1 lnc-XPO7-3:3
5.0 lnc-XPO7-3:3
5.1 lnc-RHOBTB2-57:4
5.2 lnc-XPO7-3:3