Transcript: lnc-XRCC2-3:1

Basic information

LNCipedia transcript ID: lnc-XRCC2-3:1 
LNCipedia gene ID: lnc-XRCC2-3
Location (hg38): chr7:153523215-153524215
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 818 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014011; NONHSAT124302
Alternative gene names: XLOC_006658; linc-XRCC2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.7025 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XRCC2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XRCC2-3:1
3.1 lnc-XRCC2-3:1
4.0 lnc-XRCC2-3:1
4.1 lnc-XRCC2-3:1
5.0 lnc-XRCC2-3:1
5.1 lnc-KMT2C-34:1
5.2 lnc-XRCC2-3:1